Run the Batch Job

✅ Make sure you are in the directory where you want the SLURM logs to end up.

✅ Type:

✅ Go to the Jobs tab in OOD and see if the job has started yet.

✅ If the job has not failed immediately, then a subdirectory qsirecon will have been created in derivatives and qsirecon_work will have been created in the MRIS directory.. Look to see if they are there.

You do not need to be in interactive mode. The sbatch command will ensure the job is run as a batch job!
You can start the command from any directory, but wherever you start from, the SLURM log will be deposited there. It should have a name similar to this slurm-543618.out. If anything goes wrong (e.g., the qsirecon directory is not generated, or the job finishes in seconds, look in the SLURM log to help troubleshoot. Common problems include not finding the script, not finding the right path or subject, a typo, etc.

🟢 dMRI 6: Pr (10)