You should have output like this in derivatives/mriqc_dev if participant-level processing succeeded:

✅ Start an interactive desktop so you can view the results: Double-click any html file (e.g., green box below) to display that report in the browser. You'll learn more about navigating and interpreting these reports in subsequent lessons.

HPC interactive desktop with html file selected (green box).

HTML reports depend on figures in a subdirectory!

If you send someone the HTML report by itself, all the figures will be missing because the figures are stored in a separate 'figures' subdirectory under the subject's derivatives (e.g., derivatives/mriqc_dev/sub-CAM003/figures).

If mriqc ran and produced the expected output, congratulations! You have now run a standard BIDS neuroimaging app, one that I recommend you run on all of your participants. If it didn't work, be patient with yourself and try to track down the problem.

Contact me if you get frustrated!

Remember I'm around if you get frustrated, but it really helps if you send me a good error report: attach the SLURM log, and copy and paste a tree of your outputs.

🟢 QA & MRIQC 1: Pr