Atlases for FSLeyes This page provides descriptions and links for several custom atlases that can be added to FSLeyes.
Brainnetome An atlas with functional, structural and connection information. It has a nice online presence where you can explore.
Choropleth Visualization This is the main page explaining roixtractor and linking to other resources.
Neuroimaging Choropleth Tool This is an online tool for displaying the text files generated by roixtractor.
Patterson D, Hicks T, Dufilie A, Grinstein G, Plante E (2015) Dynamic Data Visualization with Weave and Brain Choropleths. PLoS One 10: e0139453.. This paper explores the choropleth visualizations and demonstrates that they have considerable value.
Taylor, P. A., Reynolds, R. C., Calhoun, V., Gonzalez-Castillo, J., Handwerker, D. A., Bandettini, P. A. et al. (2023). Highlight results, don’t hide them: Enhance interpretation, reduce biases and improve reproducibility. Neuroimage, 274, 120138. This paper advocates for displaying all results, rather than thresholded results. This represents a very different approach than used in most fMRI papers.
Introduction to Brain Parcellation (20-minute YouTube) This is Sarah Genon's introduction to the wide variety of methods that are used to parcellate the brain into meaningful regions of interest. From OHBM 2022.
Overview of brain atlases (25-minute YouTube) This is a 10,000-foot overview of what atlases are and the associated issues. From OHBM 2022.
Lesson: fMRIprep, TemplateFlow & an Older Adult Template (~70-minutes)
Neuroimaging Workshop: 05-02-2022: Video (50 minutes; Includes link to additional documentation): FSLeyes Part 1 (~50 min)
Neuroimaging Workshop: 05-16-2022: Video (50 minutes; Includes link to additional documentation): FSLeyes part 2 (~50 min)
roixtractor Google slides (PDF of Google slides used to make this lesson)

Atlases & ROIs 1 (5 pts): roixtractor