Configure your Environment

Edit .bashrc

✅ In the OOD editor, open .bashrc

✅ Ensure that the GIFT toolbox is in the path by editing your .bashrc to include both SPM12 (already there) and GIFT: ${NEURO}/matlab/GroupICAT/icatb.

✅ In addition, there are some batch files in the directory you just downloaded (e.g., batch_subjects1_hpc.m). Those also need to be on the path, as illustrated below.

Caution!

You can include lots of directories in your Matlab Path, but including more reduces Matlab's responsiveness!

My revised MATLABPATH looks like this (but you need to specify the correct path for your copy of the nifti_subjects directory):

Yours will be different! However, you need the final / after derivatives for the path to be correct.

✅ Specify the correct outputDir (~line 98), e.g., for me this is:

Just like for the root_path, your output directory will depend on where you put nifti_subjects. The output directory will be created if it does not exist.

🟢 fMRI Analysis 2: GIFT: Practice (~20-minutes)